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* biology/py-pywgsim: fix buildRuslan Makhmatkhanov2024-06-071-1/+1
* biology/ncbi-cxx-toolkit: update 28.0.4 → 28.0.5Yuri Victorovich2024-06-062-4/+4
* biology/py-pywgsim: unbreak with python3.11Ruslan Makhmatkhanov2024-06-041-7/+4
* biology/py-pywgsim: unbreak bulk -aAntoine Brodin2024-06-031-2/+8
* biology/py-pywgsim: Limit to python 3.10Jason W. Bacon2024-06-031-1/+2
* biology/biostar-tools: Update to 1.11Jason W. Bacon2024-06-032-4/+2
* biology/metaeuk: update 6 → 7Yuri Victorovich2024-06-012-15/+12
* biology/gcta: Unbreak build on 14.x aarch64Jason W. Bacon2024-05-284-3/+33
* biology/stacks: Unbreak build on aarch64Jason W. Bacon2024-05-281-0/+11
* biology/minimap2: Unbreak build on aarch64Jason W. Bacon2024-05-281-0/+3
* biology/py-cutadapt: update to 4.8Philippe Audeoud2024-05-282-5/+5
* biology/py-PySCeS: update 1.1.1 → 1.2.1Yuri Victorovich2024-05-263-16/+28
* biology/py-pyrodigal: update 3.4.0 → 3.4.1Älven2024-05-263-18/+18
* biology/cytoscape: Broken on i386Yuri Victorovich2024-05-261-0/+1
* biology/unikmer: Add PORTSCOUT lineYuri Victorovich2024-05-251-0/+2
* biology/bowtie2: Update to 2.5.4Jason W. Bacon2024-05-242-4/+4
* biology/vcflib: add upstream reference for zig >= 0.11Jan Beich2024-05-201-0/+1
* biology/py-pyrodigal: update 3.3.0 → 3.4.0Yuri Victorovich2024-05-202-4/+4
* biology/ad2vcf: Update to 0.1.6.19Jason W. Bacon2024-05-192-5/+5
* biology/biolibc: Update to 0.2.6.4Jason W. Bacon2024-05-192-5/+5
* biology/seqwish: update 0.7.9 → 0.7.10Yuri Victorovich2024-05-182-4/+4
* biology/seqkit: update 2.8.1 → 2.8.2Yuri Victorovich2024-05-182-9/+8
* biology/iqtree: Update to 2.3.4Joseph Mingrone2024-05-163-16/+5
* biology/hyphy: Update to 2.5.61Joseph Mingrone2024-05-162-4/+4
* biology/mothur: update 1.48.0 → 1.48.1Yuri Victorovich2024-05-162-4/+4
* all: Bump after lang/go121 updateAshish SHUKLA2024-05-135-5/+5
* biology/R-cran-BiocManager: Update version 1.30.22=>1.30.23Muhammad Moinur Rahman2024-05-112-4/+4
* biology/ncbi-cxx-toolkit: update 28.0.3 → 28.0.4Yuri Victorovich2024-05-072-5/+4
* biology/star: Use EXTRACT_AFTER_ARGS to omit unused htslib dirJason W. Bacon2024-05-051-1/+2
* biology/kallisto: Use EXTRACT_AFTER_ARGS to omit unused htslib dirJason W. Bacon2024-05-051-3/+3
* biology/pbseqan: Remove expired portRene Ladan2024-05-055-700/+0
* biology/vsearch: Update to 2.28.1Jason W. Bacon2024-05-012-4/+4
* */*: chase SuiteSparse’s upgradeThierry Thomas2024-04-292-1/+2
* biology/ngs-sdk: Attempt to fix build on i386Yuri Victorovich2024-04-281-3/+23
* graphics/tiff: Update to 4.6.0Tijl Coosemans2024-04-271-1/+1
* biology/prodigy-lig: update 1.1.0 → 1.1.1Yuri Victorovich2024-04-272-6/+7
* biology/py-pysam: update 0.22.0 → 0.22.1Yuri Victorovich2024-04-253-17/+14
* biology/checkm: update 1.2.0 → 1.2.2Andrey Korobkov2024-04-233-15/+15
* biology/vcflib: Update to 1.0.10Jason W. Bacon2024-04-223-7/+6
* biology/wfa2-lib: Update to 2.3.5Jason W. Bacon2024-04-223-15/+4
* biology/py-macs3: Mark not for i386Jason W. Bacon2024-04-182-1/+4
* biology/minimap2: Fix man prefixJason W. Bacon2024-04-173-2/+4
* devel/onetbb: Update to 2021.12.0Ganael LAPLANCHE2024-04-171-1/+1
* all: Bump after lang/go121 updateAshish SHUKLA2024-04-155-4/+5
* graphics/proj: Update to 9.4.0Loïc Bartoletti2024-04-151-0/+1
* biology/hyphy: Update to 2.5.60Joseph Mingrone2024-04-142-4/+4
* biology/iqtree: Update to 2.3.2Joseph Mingrone2024-04-142-4/+4
* biology/seqkit: update 2.8.0 → 2.8.1Yuri Victorovich2024-04-132-9/+8
* biology/migrate: Use system zlib instead of excluding it from extractNuno Teixeira2024-04-121-2/+2
* cleanup: remove occurrences of WITH_DEBUGMathieu Arnold2024-04-122-2/+0
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