aboutsummaryrefslogtreecommitdiff
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* biology/ucsc-userapps: Update to v414Jason W. Bacon2021-05-153-11/+13
* *: Remove unnecessary 'port' argument from USES=readlineYasuhiro Kimura2021-05-151-1/+1
* biology/cytoscape: mark unconditionally BROKENDmitry Marakasov2021-05-121-3/+1
* biology/ugene: mark BROKEN (does not fetch)Dmitry Marakasov2021-05-121-0/+1
* biology/seqan3: Correct dependenciesYuri Victorovich2021-05-121-3/+3
* biology/seqan3: Add dependency math/lemonYuri Victorovich2021-05-121-0/+2
* New port: biology/seqan3: C++ header-only library for biological sequence ana...Yuri Victorovich2021-05-125-0/+716
* biology/libsbml: Rename LIBXML option to LIBXML2Po-Chuan Hsieh2021-05-111-6/+5
* math/py-matplotlib: chase minimum Python version in dependent portsThierry Thomas2021-05-103-3/+3
* biology/mothur: Update 1.45.2 -> 1.45.3Yuri Victorovich2021-05-092-4/+4
* Deorbit RESTRICTED && NO_CDROM, part two.Mathieu Arnold2021-05-063-3/+18
* Deorbit RESTRICTED && NO_CDROM, part one.Mathieu Arnold2021-05-064-9/+4
* biology/py-resdk: Update 13.1.0 -> 13.2.0Yuri Victorovich2021-05-052-4/+6
* biology/py-cutadapt: Update strict py-dnaio dep versionJason W. Bacon2021-05-041-1/+2
* biology/py-dnaio: Update to 0.5.1Jason W. Bacon2021-05-043-7/+7
* Clean up some thingsTobias Kortkamp2021-05-011-2/+0
* biology/py-orange3-bioinformatics: Update 3.2.2 -> 4.3.1Yuri Victorovich2021-04-272-7/+12
* biology/ncbi-entrez-direct: Update to 14.9.20210423_1Jason W. Bacon2021-04-265-41/+17
* devel/libepoll-shim: update to 0.0.20210418Jan Beich2021-04-262-11/+1
* biology/jalview: Update 2.07 -> 2.11.1.4Yuri Victorovich2021-04-256-80/+62
* Hook biology/ucsc-userapps to the buildAntoine Brodin2021-04-251-0/+1
* biology/ucsc-userapps: Command line tools from the UCSC Genome Browser projectJason W. Bacon2021-04-2513-0/+342
* biology/ncbi-entrez-direct: Access to the NCBI's interconnected databasesJason W. Bacon2021-04-2411-0/+268
* biology/viennarna: Update 2.4.17 -> 2.4.18Yuri Victorovich2021-04-243-4/+5
* biology/py-pyfaid: Update 0.5.9.2 -> 0.5.9.5Yuri Victorovich2021-04-232-4/+4
* biology/abyss: Update 2.3.0-3 -> 2.3.1Yuri Victorovich2021-04-222-5/+4
* biology/py-crossmap: Update to 0.5.4Jason W. Bacon2021-04-212-5/+4
* biology/py-crossmap: Fix build with Python 3.8+Kai Knoblich2021-04-211-1/+5
* biology/py-bigwig: Fix packaging with Python 3.8+Kai Knoblich2021-04-211-1/+1
* New port: biology/py-resdk: Resolwe SDK to interact with Resolwe server and R...Yuri Victorovich2021-04-204-0/+38
* biology/snpeff: Improvements to Makefile and patchesJason W. Bacon2021-04-194-12/+13
* biology/abyss: Update 2.2.5 -> 2.3.0-3Yuri Victorovich2021-04-183-6/+11
* biology/snpeff: Genetic variant annotation and effect prediction toolboxJason W. Bacon2021-04-187-0/+180
* biology/bbmap: BBMap short read aligner, and other bioinformatic toolsJason W. Bacon2021-04-186-0/+2064
* biology/bowtie2: Add support for powerpc64leJason W. Bacon2021-04-183-4/+17
* biology/readseq: Remove $FreeBSD$ tag inserted to silence portlintJason W. Bacon2021-04-181-2/+0
* biology/readseq: Read and reformat biosequences, Java command-line versionJason W. Bacon2021-04-185-0/+38
* biology/seqkit: Change WWW to the project URL (from GitHub URL)Yuri Victorovich2021-04-171-1/+1
* New port: biology/seqkit: Cross-platform and ultrafast toolkit for FASTA/Q fi...Yuri Victorovich2021-04-164-0/+42
* biology/ngs-sdk: Fix build on non-amd64 architectures that was broken by expl...Yuri Victorovich2021-04-151-1/+1
* Clean up some thingsTobias Kortkamp2021-04-151-1/+0
* devel/onetbb: Update to 2021.2.0 and bump dependenciesGanael LAPLANCHE2021-04-141-1/+1
* biology/diamond: Update to 2.0.9Joseph Mingrone2021-04-132-4/+4
* biology/mothur: Update to 1.45.2Jason W. Bacon2021-04-134-28/+25
* biology/py-crossmap: Lift over genomics coordinates between assembliesJason W. Bacon2021-04-126-0/+59
* biology/py-bigwig: Python access to bigWig files using libBigWigJason W. Bacon2021-04-124-0/+30
* biology/ncbi-vdb: Restore static libs installed with symlinks as shared libs ...Yuri Victorovich2021-04-122-3/+18
* biology/ngs-sdk: Restore static libs installed with symlinks as shared libs a...Yuri Victorovich2021-04-122-3/+9
* New port: biology/ncbi-vdb: NCBI's virtualized back-end for accessing Sequenc...Yuri Victorovich2021-04-1231-0/+947
* biology/ngs-sdk: Improve the 'install' target and other parts of Makefile, re...Yuri Victorovich2021-04-127-102/+62
generated by cgit v1.2.3 (git 2.25.1) at 2024-11-03 13:33:58 +0000