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/
biology
Commit message (
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Author
Age
Files
Lines
*
biology/metaeuk: Broken on systems where OpenMP isn't enabled
Yuri Victorovich
2022-12-03
1
-0
/
+4
*
biology/metaeuk: append missing bracket
Piotr Kubaj
2022-12-01
1
-1
/
+1
*
biology/metaeuk: fix build without libomp and disable -m{arch,cpu}=native
Piotr Kubaj
2022-12-01
1
-0
/
+7
*
biology/taxonkit: Update 0.13.0 -> 0.14.0
Yuri Victorovich
2022-11-29
2
-7
/
+6
*
*/*: bump PORTREVISION after the upgrade of math/suitesparse*
Thierry Thomas
2022-11-27
1
-1
/
+1
*
biology/gatk: Update 4.2.6.1 -> 4.3.0.0
Yuri Victorovich
2022-11-27
2
-8
/
+6
*
biology/cytoscape: Fix build
Yuri Victorovich
2022-11-26
1
-1
/
+1
*
biology/metaeuk: New port: Gene discovery and annotation for large-scale euka...
Yuri Victorovich
2022-11-26
4
-0
/
+47
*
biology/augustus: New port: Genome annotation tool
Yuri Victorovich
2022-11-25
7
-0
/
+1619
*
biology/barrnap: Update descr
Yuri Victorovich
2022-11-25
1
-6
/
+8
*
biology/barrnap: New port: BAsic Rapid Ribosomal RNA Predictor
Yuri Victorovich
2022-11-25
5
-0
/
+47
*
biology/cytoscape: Unbreak by re-adding and using maven-3.6.3
Yuri Victorovich
2022-11-24
1
-2
/
+0
*
biology/megahit: Add cmake patch to respect ports build flags
Jason W. Bacon
2022-11-24
2
-0
/
+18
*
biology/megahit: Ultra-fast single-node metagenomics assembly
Jason W. Bacon
2022-11-22
5
-0
/
+45
*
graphics/proj: Update to 9.1.0
Loïc Bartoletti
2022-11-17
1
-0
/
+1
*
biology/paml: Update to 4.10.6
Joseph Mingrone
2022-11-13
3
-15
/
+6
*
biology/py-pysam: Update 0.19.1 -> 0.20.0
Yuri Victorovich
2022-11-10
2
-11
/
+12
*
biology/bowtie2: fix build on powerpc64*
Piotr Kubaj
2022-11-09
1
-2
/
+2
*
biology/bowtie2: Update to 2.5.0
Jason W. Bacon
2022-11-04
3
-8
/
+12
*
biology/biosig: Make sure __LITTLE_ENDIAN is defined in include files.
Stephen Montgomery-Smith
2022-10-27
2
-4
/
+8
*
*/*: Bump PORTREVISION for consumers of libunistring
Daniel Engberg
2022-10-22
1
-1
/
+1
*
biology/libcombine: New port: C++ library for working with the COMBINE archiv...
Yuri Victorovich
2022-10-21
7
-0
/
+119
*
biology/tRNAscan-SE: Update to 2.0.11
Motomichi Matsuzaki
2022-10-12
4
-10
/
+14
*
biology/infernal: Update to 1.1.4
Motomichi Matsuzaki
2022-10-12
4
-41
/
+11
*
biology/jalview: Update 2.11.1.4 -> 2.11.2.5
Yuri Victorovich
2022-10-12
2
-8
/
+8
*
biology/hmmer: Update to 3.3.2
Jason W. Bacon
2022-10-11
3
-22
/
+11
*
biology/biosoup: Update g20201216 -> 0.10.0-2
Yuri Victorovich
2022-10-11
2
-6
/
+8
*
biology/biosig: Update 2.4.2 -> 2.4.3
Yuri Victorovich
2022-10-09
2
-4
/
+4
*
all: Bump PORTREVISION after lang/go{118,119} update
Dmitri Goutnik
2022-10-06
5
-3
/
+5
*
biology/py-valerius: New port: Python bioinformatics tools
Yuri Victorovich
2022-10-04
4
-0
/
+31
*
biology/rubygem-bio: Update to 2.0.4
Po-Chuan Hsieh
2022-10-03
2
-4
/
+4
*
devel/grpc: Update to 1.49.0
Po-Chuan Hsieh
2022-10-03
1
-1
/
+1
*
biology/hyphy: Not broken on systems where OpenMP isn't available
Yuri Victorovich
2022-10-01
1
-4
/
+0
*
biology/hyphy: Add tests; Fix ONLY_FOR_ARCHS order
Yuri Victorovich
2022-10-01
1
-2
/
+5
*
biology/hhsuite: Disable on 32-bit architectures following upstream advice
Yuri Victorovich
2022-10-01
1
-0
/
+2
*
biology/hhsuite: fix build on armv7
Robert Clausecker
2022-10-01
2
-2
/
+11
*
all: deprecate ports depending on expired security/py-keyrings.alt
Rene Ladan
2022-09-30
2
-0
/
+6
*
biology/py-PySCeS: Update 1.0.2 -> 1.0.3
Yuri Victorovich
2022-09-26
3
-26
/
+13
*
biology/seqkit: Update 2.3.0 -> 2.3.1
Yuri Victorovich
2022-09-25
2
-7
/
+6
*
biology/taxonkit: Update 0.12.0 -> 0.13.0
Yuri Victorovich
2022-09-25
2
-7
/
+6
*
biology/py-mrcfile: Update 1.4.2 -> 1.4.3
Yuri Victorovich
2022-09-24
2
-4
/
+4
*
biology/vsearch: Update to 2.22.1
Jason W. Bacon
2022-09-21
2
-4
/
+4
*
biology/hyphy: Update to 2.5.42
Joseph Mingrone
2022-09-19
2
-4
/
+4
*
biology/vsearch: Update to 2.21.2
Jason W. Bacon
2022-09-16
2
-4
/
+4
*
Mk/Uses: always use colon for build/run suffix
Felix Palmen
2022-09-11
2
-3
/
+3
*
biology/hhsuite: Broken on armv7
Yuri Victorovich
2022-09-09
1
-0
/
+2
*
*/*: Update path set in BUILD_DEPENDS for CMake
Daniel Engberg
2022-09-09
1
-1
/
+1
*
all: Bump PORTREVISION after lang/go{118,119} update
Dmitri Goutnik
2022-09-08
5
-3
/
+5
*
Remove WWW lines that have been moved into Makefiles
Stefan Eßer
2022-09-08
2
-4
/
+0
*
Move more WWW entries from pkg-descr files into Makefiles
Stefan Eßer
2022-09-08
2
-0
/
+2
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