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* biology/py-pyrodigal: New port: Python binding for Prodigal, an ORF finder fo...Yuri Victorovich2022-12-064-0/+50
* Revert: "all: deprecate ports depending on expired security/py-keyrings.alt"Rene Ladan2022-12-062-6/+0
* biology/py-biopython: Update to 1.80Wen Heping2022-12-052-5/+5
* biology/metaeuk: Broken on systems where OpenMP isn't enabledYuri Victorovich2022-12-031-0/+4
* biology/metaeuk: append missing bracketPiotr Kubaj2022-12-011-1/+1
* biology/metaeuk: fix build without libomp and disable -m{arch,cpu}=nativePiotr Kubaj2022-12-011-0/+7
* biology/taxonkit: Update 0.13.0 -> 0.14.0Yuri Victorovich2022-11-292-7/+6
* */*: bump PORTREVISION after the upgrade of math/suitesparse*Thierry Thomas2022-11-271-1/+1
* biology/gatk: Update 4.2.6.1 -> 4.3.0.0Yuri Victorovich2022-11-272-8/+6
* biology/cytoscape: Fix buildYuri Victorovich2022-11-261-1/+1
* biology/metaeuk: New port: Gene discovery and annotation for large-scale euka...Yuri Victorovich2022-11-264-0/+47
* biology/augustus: New port: Genome annotation toolYuri Victorovich2022-11-257-0/+1619
* biology/barrnap: Update descrYuri Victorovich2022-11-251-6/+8
* biology/barrnap: New port: BAsic Rapid Ribosomal RNA PredictorYuri Victorovich2022-11-255-0/+47
* biology/cytoscape: Unbreak by re-adding and using maven-3.6.3Yuri Victorovich2022-11-241-2/+0
* biology/megahit: Add cmake patch to respect ports build flagsJason W. Bacon2022-11-242-0/+18
* biology/megahit: Ultra-fast single-node metagenomics assemblyJason W. Bacon2022-11-225-0/+45
* graphics/proj: Update to 9.1.0Loïc Bartoletti2022-11-171-0/+1
* biology/paml: Update to 4.10.6Joseph Mingrone2022-11-133-15/+6
* biology/py-pysam: Update 0.19.1 -> 0.20.0Yuri Victorovich2022-11-102-11/+12
* biology/bowtie2: fix build on powerpc64*Piotr Kubaj2022-11-091-2/+2
* biology/bowtie2: Update to 2.5.0Jason W. Bacon2022-11-043-8/+12
* biology/biosig: Make sure __LITTLE_ENDIAN is defined in include files.Stephen Montgomery-Smith2022-10-272-4/+8
* */*: Bump PORTREVISION for consumers of libunistringDaniel Engberg2022-10-221-1/+1
* biology/libcombine: New port: C++ library for working with the COMBINE archiv...Yuri Victorovich2022-10-217-0/+119
* biology/tRNAscan-SE: Update to 2.0.11Motomichi Matsuzaki2022-10-124-10/+14
* biology/infernal: Update to 1.1.4Motomichi Matsuzaki2022-10-124-41/+11
* biology/jalview: Update 2.11.1.4 -> 2.11.2.5Yuri Victorovich2022-10-122-8/+8
* biology/hmmer: Update to 3.3.2Jason W. Bacon2022-10-113-22/+11
* biology/biosoup: Update g20201216 -> 0.10.0-2Yuri Victorovich2022-10-112-6/+8
* biology/biosig: Update 2.4.2 -> 2.4.3Yuri Victorovich2022-10-092-4/+4
* all: Bump PORTREVISION after lang/go{118,119} updateDmitri Goutnik2022-10-065-3/+5
* biology/py-valerius: New port: Python bioinformatics toolsYuri Victorovich2022-10-044-0/+31
* biology/rubygem-bio: Update to 2.0.4Po-Chuan Hsieh2022-10-032-4/+4
* devel/grpc: Update to 1.49.0Po-Chuan Hsieh2022-10-031-1/+1
* biology/hyphy: Not broken on systems where OpenMP isn't availableYuri Victorovich2022-10-011-4/+0
* biology/hyphy: Add tests; Fix ONLY_FOR_ARCHS orderYuri Victorovich2022-10-011-2/+5
* biology/hhsuite: Disable on 32-bit architectures following upstream adviceYuri Victorovich2022-10-011-0/+2
* biology/hhsuite: fix build on armv7Robert Clausecker2022-10-012-2/+11
* all: deprecate ports depending on expired security/py-keyrings.altRene Ladan2022-09-302-0/+6
* biology/py-PySCeS: Update 1.0.2 -> 1.0.3Yuri Victorovich2022-09-263-26/+13
* biology/seqkit: Update 2.3.0 -> 2.3.1Yuri Victorovich2022-09-252-7/+6
* biology/taxonkit: Update 0.12.0 -> 0.13.0Yuri Victorovich2022-09-252-7/+6
* biology/py-mrcfile: Update 1.4.2 -> 1.4.3Yuri Victorovich2022-09-242-4/+4
* biology/vsearch: Update to 2.22.1Jason W. Bacon2022-09-212-4/+4
* biology/hyphy: Update to 2.5.42Joseph Mingrone2022-09-192-4/+4
* biology/vsearch: Update to 2.21.2Jason W. Bacon2022-09-162-4/+4
* Mk/Uses: always use colon for build/run suffixFelix Palmen2022-09-112-3/+3
* biology/hhsuite: Broken on armv7Yuri Victorovich2022-09-091-0/+2
* */*: Update path set in BUILD_DEPENDS for CMakeDaniel Engberg2022-09-091-1/+1
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