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biology
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Author
Age
Files
Lines
*
biology/kallisto: Tag only for 64-bit architectures
Jason W. Bacon
2023-07-14
2
-0
/
+15
*
biology/cdbfasta: Update to 2023.07.10
Jason W. Bacon
2023-07-11
7
-282
/
+6
*
biology/mashmap: New port: Fast approximate aligner for long DNA sequences
Yuri Victorovich
2023-07-11
4
-0
/
+39
*
biology/cdbfasta: Update to 2018.10.05
Jason W. Bacon
2023-07-10
8
-24
/
+248
*
biology/haplohseq: Fix build on FreeBSD 14
Jason W. Bacon
2023-07-09
1
-2
/
+3
*
biology/vsearch: Update to 2.23.0
Jason W. Bacon
2023-07-08
2
-4
/
+4
*
biology/paml: Update to 4.10.7
Joseph Mingrone
2023-07-08
4
-7
/
+50
*
biology/diamond: Update to 2.1.8
Joseph Mingrone
2023-07-08
2
-4
/
+4
*
biology/kallisto: Update to 0.50.0
Jason W. Bacon
2023-07-07
5
-36
/
+62
*
biology/bifrost: Parallel tool for de Bruijn graphs
Jason W. Bacon
2023-07-07
6
-0
/
+89
*
*/*: bump PORTREVISION after the upgrade of SuiteSparse
Thierry Thomas
2023-07-01
2
-2
/
+2
*
biology/hyphy: fix build on armv7
Robert Clausecker
2023-06-30
1
-0
/
+12
*
all: remove explicit versions in USES=python for "3.x+"
Rene Ladan
2023-06-27
40
-41
/
+41
*
biology/ncbi-cxx-toolkit: Update 26.0.1 → 27.0.0
Yuri Victorovich
2023-06-27
4
-16
/
+18
*
biology/ngs-sdk: Update 2.11.2 → 3.0.1
Yuri Victorovich
2023-06-26
2
-5
/
+5
*
biology/py-ete3: Update 3.1.2 → 3.1.3
Yuri Victorovich
2023-06-26
2
-5
/
+4
*
biology/py-resdk: Update 17.0.0 → 18.0.0
Yuri Victorovich
2023-06-26
2
-5
/
+5
*
biology/py-pyrodigal: Update 2.1.0 → 2.2.0
Yuri Victorovich
2023-06-26
2
-4
/
+6
*
biology/py-PySCeS: Update 1.0.3 → 1.1.0
Yuri Victorovich
2023-06-26
2
-5
/
+4
*
biology/py-python-libsbml: Update 5.19.0 → 5.20.1
Yuri Victorovich
2023-06-26
3
-5
/
+2598
*
biology/py-deeptools: Update to 3.5.2
Jason W. Bacon
2023-06-19
2
-5
/
+4
*
biology/jalview: Fix build by using gradle-7.6.1 instead of gradle-8.0.1
Yuri Victorovich
2023-06-18
1
-2
/
+2
*
biology/py-pysam: Update 0.20.0 → 0.21.0
Yuri Victorovich
2023-06-16
2
-6
/
+5
*
biology/chip-seq: Metaport for ChIP-Seq analysis
Jason W. Bacon
2023-06-14
4
-0
/
+31
*
biology/biolibc: Update to 0.2.4.3
Jason W. Bacon
2023-06-10
2
-4
/
+5
*
biology/peak-classifier: Update to 0.1.4.8
Jason W. Bacon
2023-06-10
2
-6
/
+5
*
biology/fasda: Update to 0.1.3
Jason W. Bacon
2023-06-10
2
-4
/
+4
*
biology/biolibc-tools: Update to 0.1.4.6
Jason W. Bacon
2023-06-10
2
-5
/
+5
*
biology/abyss: Fix build with llvm15
Muhammad Moinur Rahman
2023-06-07
1
-1
/
+7
*
biology/ncbi-toolkit: Fix build with llvm15
Muhammad Moinur Rahman
2023-06-06
1
-1
/
+7
*
biology/gatk: Update 4.3.0.0 → 4.4.0.0
Yuri Victorovich
2023-06-04
2
-8
/
+10
*
biology/fastp: Update to 0.23.4
Jason W. Bacon
2023-05-31
2
-7
/
+4
*
biology/ncbi-blast+: Tag only for 64-bit architectures
Jason W. Bacon
2023-05-29
1
-0
/
+3
*
biology/hyphy: Update to 2.5.51hf
Joseph Mingrone
2023-05-29
2
-4
/
+4
*
biology/libsedml: Fix build with libsbml 5.20.0
Po-Chuan Hsieh
2023-05-27
1
-0
/
+11
*
biology/libcombine: Fix build with libsbml 5.20.0
Po-Chuan Hsieh
2023-05-27
1
-0
/
+11
*
biology/libsbml: Update to 5.20.0
Po-Chuan Hsieh
2023-05-27
5
-566
/
+199
*
biology/ncbi-blast+: Update to 2.14.0
Jason W. Bacon
2023-05-27
4
-123
/
+827
*
biology/py-pysam: unbundle biology/htslib
Robert Clausecker
2023-05-25
1
-2
/
+6
*
biology/seqtk: Update to 1.4
Jason W. Bacon
2023-05-23
2
-4
/
+4
*
biology/py-macs2: Update to 2.2.8
Jason W. Bacon
2023-05-22
2
-5
/
+4
*
biology/kmcp: Update 0.9.1 → 0.9.2
Yuri Victorovich
2023-05-22
2
-7
/
+6
*
biology/gff2ps: drop maintainership
Vinícius Zavam
2023-05-21
1
-1
/
+1
*
biology/biosoup: Update 0.10.0-2 → 0.11.0
Yuri Victorovich
2023-05-19
2
-6
/
+4
*
*/*: llvm15 build fixes
Muhammad Moinur Rahman
2023-05-17
2
-2
/
+2
*
biology/wise: Unbreak on HEAD
Muhammad Moinur Rahman
2023-05-14
1
-6
/
+16
*
biology/fastp: Update to 0.23.3
Jason W. Bacon
2023-05-14
2
-5
/
+6
*
biology/biosig: Unbreak on HEAD
Muhammad Moinur Rahman
2023-05-12
1
-1
/
+7
*
biology/py-multiqc: Update to 1.14
Jason W. Bacon
2023-05-12
3
-28
/
+15
*
biology/phyml: fix build on non-x86
Robert Clausecker
2023-05-08
4
-2
/
+100
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