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* biology/rna-seq: Add biology/star dep to metaportJason W. Bacon2023-07-312-2/+3
* biology/vcflib: not for armv6/7Robert Clausecker2023-07-301-0/+3
* */*: Bump jpeg-turbo users treewideDaniel Engberg2023-07-283-2/+3
* biology/py-htseq: Python library for sequence analysisJason W. Bacon2023-07-284-0/+38
* biology/atac-seq: Add curl to metaport depsJason W. Bacon2023-07-282-4/+4
* biology/rna-seq: Add curl to metaport depsJason W. Bacon2023-07-282-4/+4
* graphics/proj: Update to 9.2.1Loïc Bartoletti2023-07-261-0/+1
* biology/py-python-libsbml: Use CMAKE_BUILD_PARALLEL_LEVEL env var for paralle...Yuri Victorovich2023-07-262-23/+2
* biology/py-python-libsbml: Parallelize buildYuri Victorovich2023-07-262-0/+23
* biology/py-PySCeS: Update 1.1.0 → 1.1.1Yuri Victorovich2023-07-262-7/+8
* */*: Fix build with llvm16 on 13.2-STABLEMuhammad Moinur Rahman2023-07-262-6/+4
* biology/kallisto: Clean up buildJason W. Bacon2023-07-244-11/+69
* biology/salmon: Set NOT_FOR_ARCHS to all 32-bit processorsJason W. Bacon2023-07-221-0/+3
* biology/star: Set NOT_FOR_ARCHS to all 32-bit processorsJason W. Bacon2023-07-221-2/+2
* biology/viennarna: Update 2.6.2 → 2.6.3Yuri Victorovich2023-07-222-5/+4
* biology/abyss: Update 2.3.5 → 2.3.7Yuri Victorovich2023-07-223-17/+6
* biology/prodigal: Update 2.6.3-7 → 2.6.3-16Yuri Victorovich2023-07-222-5/+5
* biology/seqwish: Correct COMMENT and WWWYuri Victorovich2023-07-211-2/+2
* biology/salmon: Transcript-level quantification of RNA-seqJason W. Bacon2023-07-2112-0/+341
* biology/btllib: New port: Bioinformatics Technology Lab common code libraryYuri Victorovich2023-07-218-0/+156
* biology/seqwish: New port: Assembly By Short Sequences: parallel, paired-end ...Yuri Victorovich2023-07-217-0/+108
* biology/wise: Fix build with llvm16Muhammad Moinur Rahman2023-07-211-0/+4
* biology/star: Update to 2.7.10bJason W. Bacon2023-07-215-16/+14
* biology/ncbi-toolkit: Fix build with llvm16Muhammad Moinur Rahman2023-07-201-2/+6
* biology/canu: Fix build with llvm16Muhammad Moinur Rahman2023-07-201-5/+4
* biology/canu: Fix build under clang 16Jason W. Bacon2023-07-204-25/+56
* biology/mashmap: Broken on i386; Fix build on other architectures by using NA...Yuri Victorovich2023-07-191-0/+7
* biology/{,py-}biosig: Update 2.5.0 → 2.5.2Yuri Victorovich2023-07-195-10/+11
* devel/py-setuptools: convert individual consumers to ${PY_SETUPTOOLS}Charlie Li2023-07-181-1/+1
* biology/locarna: Fix testsYuri Victorovich2023-07-171-2/+10
* biology/kmcp: Update 0.9.2 → 0.9.3Yuri Victorovich2023-07-172-6/+6
* biology/libbigwig: Update 0.4.6 → 0.4.7Yuri Victorovich2023-07-172-14/+12
* biology/seqkit: Update 2.4.0 → 2.5.0Yuri Victorovich2023-07-172-9/+8
* biology/locarna: New port: LocARNA provides several tools for the structural ...Yuri Victorovich2023-07-165-0/+179
* biology/viennarna: Remove unnecessary library from .pc file; Correct pkg-descrYuri Victorovich2023-07-163-14/+19
* biology/viennarna: Update 2.5.1 → 2.6.2Yuri Victorovich2023-07-163-8/+24
* biology/bifrost: Portability fixesJason W. Bacon2023-07-162-0/+14
* biology/bcf-score: Unbreak build with clang 16Jason W. Bacon2023-07-163-0/+23
* biology/vcftools: Unbreak build with clang 16Jason W. Bacon2023-07-161-0/+3
* biology/clustalw: Unbreak build for clang 16Jason W. Bacon2023-07-152-1/+3
* biology/metaeuk: Add NATIVE optionYuri Victorovich2023-07-151-3/+4
* biology/kallisto: Tag only for 64-bit architecturesJason W. Bacon2023-07-142-0/+15
* biology/cdbfasta: Update to 2023.07.10Jason W. Bacon2023-07-117-282/+6
* biology/mashmap: New port: Fast approximate aligner for long DNA sequencesYuri Victorovich2023-07-114-0/+39
* biology/cdbfasta: Update to 2018.10.05Jason W. Bacon2023-07-108-24/+248
* biology/haplohseq: Fix build on FreeBSD 14Jason W. Bacon2023-07-091-2/+3
* biology/vsearch: Update to 2.23.0Jason W. Bacon2023-07-082-4/+4
* biology/paml: Update to 4.10.7Joseph Mingrone2023-07-084-7/+50
* biology/diamond: Update to 2.1.8Joseph Mingrone2023-07-082-4/+4
* biology/kallisto: Update to 0.50.0Jason W. Bacon2023-07-075-36/+62
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