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* biology/mothur: Fix build with clang-16Yuri Victorovich2023-08-151-0/+1
* biology/bifrost: Control -march via CPUTYPE make variableJason W. Bacon2023-08-122-10/+12
* biology/cd-hit: allow to build without GCC on libomp-less systemsPiotr Kubaj2023-08-121-4/+4
* biology/peak-classifier: Update to 0.1.4.11Jason W. Bacon2023-08-112-6/+6
* biology/biolibc-tools: Update to 0.1.4.9Jason W. Bacon2023-08-113-7/+7
* biology/fasda: Update to 0.1.4Jason W. Bacon2023-08-112-4/+5
* biology/biolibc: Update to 0.2.5Jason W. Bacon2023-08-113-68/+67
* biology/sra-tools: Update to 3.0.6Jason W. Bacon2023-08-1069-2226/+898
* biology/hyphy: Update to 2.5.52Joseph Mingrone2023-08-094-19/+6
* biology/seqkit: Update 2.5.0 → 2.5.1Yuri Victorovich2023-08-092-9/+8
* biology/seqan-apps: Fix build with llvm16Muhammad Moinur Rahman2023-08-061-0/+1
* biology/augustus: Fix build with llvm16Muhammad Moinur Rahman2023-08-061-0/+1
* biology/py-macs2: Update to 2.2.9.1Jason W. Bacon2023-08-063-32/+14
* p5-transdecoder: Update to 5.7.1Jason W. Bacon2023-08-052-4/+4
* biology/p5-TrimGalore: Fix buildMuhammad Moinur Rahman2023-08-051-1/+1
* biology/primer3: Fix build with llvm16Muhammad Moinur Rahman2023-08-051-1/+1
* biology/py-htseq: Update to 2.0.4Jason W. Bacon2023-08-052-4/+4
* biology/py-multiqc: Update to 1.15Jason W. Bacon2023-08-052-4/+4
* all: Bump PORTREVISION after lang/go{119,120} updateDmitri Goutnik2023-08-045-2/+5
* biology/trimadap: drop GCC requirement on powerpc64lePiotr Kubaj2023-08-031-7/+2
* biology/py-scikit-bio: Update 0.5.8 → 0.5.9Yuri Victorovich2023-08-033-12/+22
* biology/py-orange3-single-cell: Add NO_ARCHPo-Chuan Hsieh2023-07-311-0/+2
* biology/py-orange3-bioinformatics: Change RUN_DEPENDS from py-requests-cache ...Po-Chuan Hsieh2023-07-311-2/+2
* biology/py-Genesis-PyAPI: Add NO_ARCHPo-Chuan Hsieh2023-07-311-0/+2
* biology/rna-seq: Add biology/star dep to metaportJason W. Bacon2023-07-312-2/+3
* biology/vcflib: not for armv6/7Robert Clausecker2023-07-301-0/+3
* */*: Bump jpeg-turbo users treewideDaniel Engberg2023-07-283-2/+3
* biology/py-htseq: Python library for sequence analysisJason W. Bacon2023-07-284-0/+38
* biology/atac-seq: Add curl to metaport depsJason W. Bacon2023-07-282-4/+4
* biology/rna-seq: Add curl to metaport depsJason W. Bacon2023-07-282-4/+4
* graphics/proj: Update to 9.2.1Loïc Bartoletti2023-07-261-0/+1
* biology/py-python-libsbml: Use CMAKE_BUILD_PARALLEL_LEVEL env var for paralle...Yuri Victorovich2023-07-262-23/+2
* biology/py-python-libsbml: Parallelize buildYuri Victorovich2023-07-262-0/+23
* biology/py-PySCeS: Update 1.1.0 → 1.1.1Yuri Victorovich2023-07-262-7/+8
* */*: Fix build with llvm16 on 13.2-STABLEMuhammad Moinur Rahman2023-07-262-6/+4
* biology/kallisto: Clean up buildJason W. Bacon2023-07-244-11/+69
* biology/salmon: Set NOT_FOR_ARCHS to all 32-bit processorsJason W. Bacon2023-07-221-0/+3
* biology/star: Set NOT_FOR_ARCHS to all 32-bit processorsJason W. Bacon2023-07-221-2/+2
* biology/viennarna: Update 2.6.2 → 2.6.3Yuri Victorovich2023-07-222-5/+4
* biology/abyss: Update 2.3.5 → 2.3.7Yuri Victorovich2023-07-223-17/+6
* biology/prodigal: Update 2.6.3-7 → 2.6.3-16Yuri Victorovich2023-07-222-5/+5
* biology/seqwish: Correct COMMENT and WWWYuri Victorovich2023-07-211-2/+2
* biology/salmon: Transcript-level quantification of RNA-seqJason W. Bacon2023-07-2112-0/+341
* biology/btllib: New port: Bioinformatics Technology Lab common code libraryYuri Victorovich2023-07-218-0/+156
* biology/seqwish: New port: Assembly By Short Sequences: parallel, paired-end ...Yuri Victorovich2023-07-217-0/+108
* biology/wise: Fix build with llvm16Muhammad Moinur Rahman2023-07-211-0/+4
* biology/star: Update to 2.7.10bJason W. Bacon2023-07-215-16/+14
* biology/ncbi-toolkit: Fix build with llvm16Muhammad Moinur Rahman2023-07-201-2/+6
* biology/canu: Fix build with llvm16Muhammad Moinur Rahman2023-07-201-5/+4
* biology/canu: Fix build under clang 16Jason W. Bacon2023-07-204-25/+56
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