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biology
Commit message (
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Author
Age
Files
Lines
*
biology/py-orange3-single-cell: Add NO_ARCH
Po-Chuan Hsieh
2023-07-31
1
-0
/
+2
*
biology/py-orange3-bioinformatics: Change RUN_DEPENDS from py-requests-cache ...
Po-Chuan Hsieh
2023-07-31
1
-2
/
+2
*
biology/py-Genesis-PyAPI: Add NO_ARCH
Po-Chuan Hsieh
2023-07-31
1
-0
/
+2
*
biology/rna-seq: Add biology/star dep to metaport
Jason W. Bacon
2023-07-31
2
-2
/
+3
*
biology/vcflib: not for armv6/7
Robert Clausecker
2023-07-30
1
-0
/
+3
*
*/*: Bump jpeg-turbo users treewide
Daniel Engberg
2023-07-28
3
-2
/
+3
*
biology/py-htseq: Python library for sequence analysis
Jason W. Bacon
2023-07-28
4
-0
/
+38
*
biology/atac-seq: Add curl to metaport deps
Jason W. Bacon
2023-07-28
2
-4
/
+4
*
biology/rna-seq: Add curl to metaport deps
Jason W. Bacon
2023-07-28
2
-4
/
+4
*
graphics/proj: Update to 9.2.1
Loïc Bartoletti
2023-07-26
1
-0
/
+1
*
biology/py-python-libsbml: Use CMAKE_BUILD_PARALLEL_LEVEL env var for paralle...
Yuri Victorovich
2023-07-26
2
-23
/
+2
*
biology/py-python-libsbml: Parallelize build
Yuri Victorovich
2023-07-26
2
-0
/
+23
*
biology/py-PySCeS: Update 1.1.0 → 1.1.1
Yuri Victorovich
2023-07-26
2
-7
/
+8
*
*/*: Fix build with llvm16 on 13.2-STABLE
Muhammad Moinur Rahman
2023-07-26
2
-6
/
+4
*
biology/kallisto: Clean up build
Jason W. Bacon
2023-07-24
4
-11
/
+69
*
biology/salmon: Set NOT_FOR_ARCHS to all 32-bit processors
Jason W. Bacon
2023-07-22
1
-0
/
+3
*
biology/star: Set NOT_FOR_ARCHS to all 32-bit processors
Jason W. Bacon
2023-07-22
1
-2
/
+2
*
biology/viennarna: Update 2.6.2 → 2.6.3
Yuri Victorovich
2023-07-22
2
-5
/
+4
*
biology/abyss: Update 2.3.5 → 2.3.7
Yuri Victorovich
2023-07-22
3
-17
/
+6
*
biology/prodigal: Update 2.6.3-7 → 2.6.3-16
Yuri Victorovich
2023-07-22
2
-5
/
+5
*
biology/seqwish: Correct COMMENT and WWW
Yuri Victorovich
2023-07-21
1
-2
/
+2
*
biology/salmon: Transcript-level quantification of RNA-seq
Jason W. Bacon
2023-07-21
12
-0
/
+341
*
biology/btllib: New port: Bioinformatics Technology Lab common code library
Yuri Victorovich
2023-07-21
8
-0
/
+156
*
biology/seqwish: New port: Assembly By Short Sequences: parallel, paired-end ...
Yuri Victorovich
2023-07-21
7
-0
/
+108
*
biology/wise: Fix build with llvm16
Muhammad Moinur Rahman
2023-07-21
1
-0
/
+4
*
biology/star: Update to 2.7.10b
Jason W. Bacon
2023-07-21
5
-16
/
+14
*
biology/ncbi-toolkit: Fix build with llvm16
Muhammad Moinur Rahman
2023-07-20
1
-2
/
+6
*
biology/canu: Fix build with llvm16
Muhammad Moinur Rahman
2023-07-20
1
-5
/
+4
*
biology/canu: Fix build under clang 16
Jason W. Bacon
2023-07-20
4
-25
/
+56
*
biology/mashmap: Broken on i386; Fix build on other architectures by using NA...
Yuri Victorovich
2023-07-19
1
-0
/
+7
*
biology/{,py-}biosig: Update 2.5.0 → 2.5.2
Yuri Victorovich
2023-07-19
5
-10
/
+11
*
devel/py-setuptools: convert individual consumers to ${PY_SETUPTOOLS}
Charlie Li
2023-07-18
1
-1
/
+1
*
biology/locarna: Fix tests
Yuri Victorovich
2023-07-17
1
-2
/
+10
*
biology/kmcp: Update 0.9.2 → 0.9.3
Yuri Victorovich
2023-07-17
2
-6
/
+6
*
biology/libbigwig: Update 0.4.6 → 0.4.7
Yuri Victorovich
2023-07-17
2
-14
/
+12
*
biology/seqkit: Update 2.4.0 → 2.5.0
Yuri Victorovich
2023-07-17
2
-9
/
+8
*
biology/locarna: New port: LocARNA provides several tools for the structural ...
Yuri Victorovich
2023-07-16
5
-0
/
+179
*
biology/viennarna: Remove unnecessary library from .pc file; Correct pkg-descr
Yuri Victorovich
2023-07-16
3
-14
/
+19
*
biology/viennarna: Update 2.5.1 → 2.6.2
Yuri Victorovich
2023-07-16
3
-8
/
+24
*
biology/bifrost: Portability fixes
Jason W. Bacon
2023-07-16
2
-0
/
+14
*
biology/bcf-score: Unbreak build with clang 16
Jason W. Bacon
2023-07-16
3
-0
/
+23
*
biology/vcftools: Unbreak build with clang 16
Jason W. Bacon
2023-07-16
1
-0
/
+3
*
biology/clustalw: Unbreak build for clang 16
Jason W. Bacon
2023-07-15
2
-1
/
+3
*
biology/metaeuk: Add NATIVE option
Yuri Victorovich
2023-07-15
1
-3
/
+4
*
biology/kallisto: Tag only for 64-bit architectures
Jason W. Bacon
2023-07-14
2
-0
/
+15
*
biology/cdbfasta: Update to 2023.07.10
Jason W. Bacon
2023-07-11
7
-282
/
+6
*
biology/mashmap: New port: Fast approximate aligner for long DNA sequences
Yuri Victorovich
2023-07-11
4
-0
/
+39
*
biology/cdbfasta: Update to 2018.10.05
Jason W. Bacon
2023-07-10
8
-24
/
+248
*
biology/haplohseq: Fix build on FreeBSD 14
Jason W. Bacon
2023-07-09
1
-2
/
+3
*
biology/vsearch: Update to 2.23.0
Jason W. Bacon
2023-07-08
2
-4
/
+4
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